HL_5T2C_061

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_061 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.168

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5T2C|1|A|G|4250
5T2C|1|A|A|4251
5T2C|1|A|C|4252
5T2C|1|A|A|4253
5T2C|1|A|G|4254
5T2C|1|A|A|4255
5T2C|1|A|A|4256
5T2C|1|A|A|4257
5T2C|1|A|C|4258

Current chains

Chain A

28S rRNA

Nearby chains

Chain q

60S ribosomal protein L11