HL_5T2C_072

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5T2C|1|A|G|4694, 5T2C|1|A|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_072 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.118

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|C|4688
5T2C|1|A|U|4689
5T2C|1|A|G|4690
5T2C|1|A|A|4691
5T2C|1|A|A|4692
5T2C|1|A|C|4693
5T2C|1|A|G|4694
5T2C|1|A|C|4695
5T2C|1|A|C|4696
5T2C|1|A|U|4697
5T2C|1|A|C|4698
5T2C|1|A|U|4699
5T2C|1|A|A|4700
5T2C|1|A|A|4701
5T2C|1|A|G|4702

Current chains

Chain A

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L13a

Chain g

Ubiquitin-60S ribosomal protein L40

Chain o

60S ribosomal protein L9