HL_5T2C_074

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

5T2C|1|A|G|4910, 5T2C|1|A|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_074 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1647

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5T2C|1|A|G|4907
5T2C|1|A|G|4908
5T2C|1|A|A|4909
5T2C|1|A|G|4910
5T2C|1|A|A|4911
5T2C|1|A|G|4912
5T2C|1|A|G|4913
5T2C|1|A|C|4914

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain I

60S ribosomal protein L13a