HL_5T2C_075

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

5T2C|1|A|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_075 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1585

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

5T2C|1|A|G|4975
5T2C|1|A|U|4976
5T2C|1|A|A|4977
5T2C|1|A|G|4978
5T2C|1|A|A|4979
5T2C|1|A|C|4980
5T2C|1|A|G|4981
5T2C|1|A|A|4982
5T2C|1|A|C|4983

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain J

60S ribosomal protein L17