HL_5T2C_103

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_103 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4608

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

5T2C|1|AA|C|1460
5T2C|1|AA|G|1461
5T2C|1|AA|U|1462
5T2C|1|AA|U|1463
5T2C|1|AA|C|1464
5T2C|1|AA|A|1465
5T2C|1|AA|G|1466

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AI

Receptor of activated protein C kinase 1

Chain Az

40S ribosomal protein S17