HL_5T2C_105
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUUGCAAUUAUUC
- Length
- 14 nucleotides
- Bulged bases
- 5T2C|1|AA|U|1621, 5T2C|1|AA|U|1622, 5T2C|1|AA|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_105 not in the Motif Atlas
- Geometric match to HL_6ZDU_001
- Geometric discrepancy: 0.3679
- The information below is about HL_6ZDU_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5T2C|1|AA|G|1613
5T2C|1|AA|A|1614
5T2C|1|AA|U|1615
5T2C|1|AA|U|1616
5T2C|1|AA|G|1617
5T2C|1|AA|C|1618
5T2C|1|AA|A|1619
5T2C|1|AA|A|1620
5T2C|1|AA|U|1621
5T2C|1|AA|U|1622
5T2C|1|AA|A|1623
5T2C|1|AA|U|1624
5T2C|1|AA|U|1625
5T2C|1|AA|C|1626
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain A0
- 40S ribosomal protein S18
- Chain AG
- 40S ribosomal protein S29
- Chain AU
- 40S ribosomal protein S19
- Chain Ax
- 40S ribosomal protein S15
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