HL_5T2C_109

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAGCGGAAGCG

Length

13 nucleotides

Bulged bases

5T2C|1|An|C|17, 5T2C|1|An|G|18, 5T2C|1|An|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_109 not in the Motif Atlas

Homologous match to HL_5E6M_001

Geometric discrepancy: 0.5789

The information below is about HL_5E6M_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76195.1

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5T2C|1|An|C|12
5T2C|1|An|G|13
5T2C|1|An|C|14
5T2C|1|An|A|15
5T2C|1|An|G|16
5T2C|1|An|C|17
5T2C|1|An|G|18
5T2C|1|An|G|19
5T2C|1|An|A|20
5T2C|1|An|A|21
5T2C|1|An|G|22
5T2C|1|An|C|23
5T2C|1|An|G|24

Current chains

Chain An

tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AO

40S ribosomal protein S14