HL_5T2C_116

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

5T2C|1|C|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_116 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3171

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5T2C|1|C|G|121
5T2C|1|C|G|122
5T2C|1|C|U|123
5T2C|1|C|U|124
5T2C|1|C|C|125
5T2C|1|C|C|126
5T2C|1|C|U|127
5T2C|1|C|C|128
5T2C|1|C|C|129

Current chains

Chain C

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain R

60S ribosomal protein L23a