HL_5T2C_125

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

5T2C|1|AA|G|836, 5T2C|1|AA|G|838, 5T2C|1|AA|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T2C_125 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3921

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5T2C|1|AA|C|833
5T2C|1|AA|C|834
5T2C|1|AA|C|835
5T2C|1|AA|G|836
5T2C|1|AA|A|837
5T2C|1|AA|G|838
5T2C|1|AA|C|839
5T2C|1|AA|C|840
5T2C|1|AA|G|841

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AQ

40S ribosomal protein S24

Chain Ar

40S ribosomal protein S4, X isoform