HL_5T2C_127

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGACCCCCGAGCGGUCGGCGUCC

Length

24 nucleotides

Bulged bases

5T2C|1|AA|A|1414, 5T2C|1|AA|C|1416, 5T2C|1|AA|C|1418, 5T2C|1|AA|C|1423, 5T2C|1|AA|G|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|1411
5T2C|1|AA|C|1412
5T2C|1|AA|G|1413
5T2C|1|AA|A|1414
5T2C|1|AA|C|1415
5T2C|1|AA|C|1416
5T2C|1|AA|C|1417
5T2C|1|AA|C|1418
5T2C|1|AA|C|1419
5T2C|1|AA|G|1420
5T2C|1|AA|A|1421
5T2C|1|AA|G|1422
5T2C|1|AA|C|1423
5T2C|1|AA|G|1424
5T2C|1|AA|G|1425
5T2C|1|AA|U|1426
5T2C|1|AA|C|1427
5T2C|1|AA|G|1428
5T2C|1|AA|G|1429
5T2C|1|AA|C|1430
5T2C|1|AA|G|1431
5T2C|1|AA|U|1432
5T2C|1|AA|C|1433
5T2C|1|AA|C|1434

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AU

40S ribosomal protein S19

Chain Ay

40S ribosomal protein S16