HL_5T2C_130
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCC
- Length
- 59 nucleotides
- Bulged bases
- 5T2C|1|An|C|17, 5T2C|1|An|C|27, 5T2C|1|An|C|33, 5T2C|1|An|C|34, 5T2C|1|An|A|38, 5T2C|1|An|C|39, 5T2C|1|An|U|47, 5T2C|1|An|C|56
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5T2C|1|An|G|8
5T2C|1|An|U|9
5T2C|1|An|G|10
5T2C|1|An|G|11
5T2C|1|An|C|12
5T2C|1|An|G|13
5T2C|1|An|C|14
5T2C|1|An|A|15
5T2C|1|An|G|16
5T2C|1|An|C|17
5T2C|1|An|G|18
5T2C|1|An|G|19
5T2C|1|An|A|20
5T2C|1|An|A|21
5T2C|1|An|G|22
5T2C|1|An|C|23
5T2C|1|An|G|24
5T2C|1|An|U|25
5T2C|1|An|G|26
5T2C|1|An|C|27
5T2C|1|An|U|28
5T2C|1|An|G|29
5T2C|1|An|G|30
5T2C|1|An|G|31
5T2C|1|An|C|32
5T2C|1|An|C|33
5T2C|1|An|C|34
5T2C|1|An|A|35
5T2C|1|An|U|36
5T2C|1|An|A|37
5T2C|1|An|A|38
5T2C|1|An|C|39
5T2C|1|An|C|40
5T2C|1|An|C|41
5T2C|1|An|A|42
5T2C|1|An|G|43
5T2C|1|An|A|44
5T2C|1|An|G|45
5T2C|1|An|G|46
5T2C|1|An|U|47
5T2C|1|An|C|48
5T2C|1|An|G|49
5T2C|1|An|A|50
5T2C|1|An|U|51
5T2C|1|An|G|52
5T2C|1|An|G|53
5T2C|1|An|A|54
5T2C|1|An|U|55
5T2C|1|An|C|56
5T2C|1|An|G|57
5T2C|1|An|A|58
5T2C|1|An|A|59
5T2C|1|An|A|60
5T2C|1|An|C|61
5T2C|1|An|C|62
5T2C|1|An|A|63
5T2C|1|An|U|64
5T2C|1|An|C|65
5T2C|1|An|C|66
Current chains
- Chain An
- tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AF
- 40S ribosomal protein S28
- Chain AO
- 40S ribosomal protein S14
- Chain As
- 40S ribosomal protein S5
- Chain i
- 60S ribosomal protein L36a
- Chain l
- 60S ribosomal protein L10a
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