HL_5T2C_138
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5T2C|1|AA|A|448, 5T2C|1|AA|C|450, 5T2C|1|AA|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T2C_138 not in the Motif Atlas
- Homologous match to HL_8CRE_200
- Geometric discrepancy: 0.2056
- The information below is about HL_8CRE_200
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5T2C|1|AA|C|441
5T2C|1|AA|C|442
5T2C|1|AA|U|443
5T2C|1|AA|G|444
5T2C|1|AA|A|445
5T2C|1|AA|G|446
5T2C|1|AA|A|447
5T2C|1|AA|A|448
5T2C|1|AA|A|449
5T2C|1|AA|C|450
5T2C|1|AA|G|451
5T2C|1|AA|G|452
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain AK
- 40S ribosomal protein S6
- Chain AQ
- 40S ribosomal protein S24
- Chain Ar
- 40S ribosomal protein S4, X isoform
- Chain Au
- 40S ribosomal protein S8
Coloring options: