HL_5T2C_140

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCU

Length

39 nucleotides

Bulged bases

5T2C|1|AA|G|1754, 5T2C|1|AA|C|1762, 5T2C|1|AA|G|1763, 5T2C|1|AA|G|1764, 5T2C|1|AA|C|1765, 5T2C|1|AA|C|1766, 5T2C|1|AA|C|1767, 5T2C|1|AA|A|1768, 5T2C|1|AA|C|1769, 5T2C|1|AA|G|1770, 5T2C|1|AA|G|1771, 5T2C|1|AA|C|1773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|AA|G|1748
5T2C|1|AA|G|1749
5T2C|1|AA|C|1750
5T2C|1|AA|C|1751
5T2C|1|AA|C|1752
5T2C|1|AA|C|1753
5T2C|1|AA|G|1754
5T2C|1|AA|C|1755
5T2C|1|AA|C|1756
5T2C|1|AA|G|1757
5T2C|1|AA|G|1758
5T2C|1|AA|G|1759
5T2C|1|AA|G|1760
5T2C|1|AA|U|1761
5T2C|1|AA|C|1762
5T2C|1|AA|G|1763
5T2C|1|AA|G|1764
5T2C|1|AA|C|1765
5T2C|1|AA|C|1766
5T2C|1|AA|C|1767
5T2C|1|AA|A|1768
5T2C|1|AA|C|1769
5T2C|1|AA|G|1770
5T2C|1|AA|G|1771
5T2C|1|AA|C|1772
5T2C|1|AA|C|1773
5T2C|1|AA|C|1774
5T2C|1|AA|U|1775
5T2C|1|AA|G|1776
5T2C|1|AA|G|1777
5T2C|1|AA|C|1778
5T2C|1|AA|G|1779
5T2C|1|AA|G|1780
5T2C|1|AA|A|1781
5T2C|1|AA|G|1782
5T2C|1|AA|C|1783
5T2C|1|AA|G|1784
5T2C|1|AA|C|1785
5T2C|1|AA|U|1786

Current chains

Chain AA

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S6