HL_5T62_004

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5T62|1|A|U|133, 5T62|1|A|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1085

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5T62|1|A|C|132
5T62|1|A|U|133
5T62|1|A|U|134
5T62|1|A|C|135
5T62|1|A|G|136

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L15-A

Chain u

60S ribosomal protein L35-A