HL_5T62_029
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5T62|1|A|U|1351, 5T62|1|A|G|1354, 5T62|1|A|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T62_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.2344
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5T62|1|A|U|1347
5T62|1|A|U|1348
5T62|1|A|G|1349
5T62|1|A|A|1350
5T62|1|A|U|1351
5T62|1|A|A|1352
5T62|1|A|U|1353
5T62|1|A|G|1354
5T62|1|A|A|1355
5T62|1|A|U|1356
5T62|1|A|G|1357
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L4-A
- Chain H
- 60S ribosomal protein L6-A
- Chain d
- 60S ribosomal protein L18-A
- Chain r
- 60S ribosomal protein L32
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