HL_5T62_050
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 5T62|1|A|U|2298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T62_050 not in the Motif Atlas
- Homologous match to HL_5TBW_050
- Geometric discrepancy: 0.1037
- The information below is about HL_5TBW_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5T62|1|A|U|2292
5T62|1|A|C|2293
5T62|1|A|U|2294
5T62|1|A|A|2295
5T62|1|A|A|2296
5T62|1|A|U|2297
5T62|1|A|U|2298
5T62|1|A|A|2299
5T62|1|A|G|2300
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain V
- 60S ribosomal export protein NMD3
- Chain W
- Large subunit GTPase 1
- Chain i
- 60S ribosomal protein L23-A
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