HL_5T62_056
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5T62|1|A|A|2637, 5T62|1|A|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T62_056 not in the Motif Atlas
- Homologous match to HL_5TBW_055
- Geometric discrepancy: 0.1089
- The information below is about HL_5TBW_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
5T62|1|A|U|2633
5T62|1|A|U|2634
5T62|1|A|A|2635
5T62|1|A|A|2636
5T62|1|A|A|2637
5T62|1|A|C|2638
5T62|1|A|G|2639
5T62|1|A|A|2640
5T62|1|A|U|2641
5T62|1|A|A|2642
5T62|1|A|A|2643
5T62|1|A|C|2644
5T62|1|A|G|2645
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L10
- Chain g
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L29
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