HL_5T62_059
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5T62_059 not in the Motif Atlas
- Homologous match to HL_5TBW_058
- Geometric discrepancy: 0.1112
- The information below is about HL_5TBW_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5T62|1|A|U|2724
5T62|1|A|U|2725
5T62|1|A|C|2726
5T62|1|A|A|2727
5T62|1|A|G|2728
5T62|1|A|U|2729
5T62|1|A|G|2730
5T62|1|A|U|2731
5T62|1|A|G|2732
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L42-A
- Chain d
- 60S ribosomal protein L18-A
- Chain g
- 60S ribosomal protein L21-A
- Chain n
- 60S ribosomal protein L28
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