HL_5T62_066

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_066 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.1231

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5T62|1|A|C|3025
5T62|1|A|G|3026
5T62|1|A|A|3027
5T62|1|A|G|3028
5T62|1|A|A|3029
5T62|1|A|G|3030

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain z

Ubiquitin-60S ribosomal protein L40