HL_5T62_068

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5T62|1|A|G|3116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T62_068 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.0761

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5T62|1|A|C|3110
5T62|1|A|U|3111
5T62|1|A|G|3112
5T62|1|A|A|3113
5T62|1|A|A|3114
5T62|1|A|C|3115
5T62|1|A|G|3116
5T62|1|A|C|3117
5T62|1|A|C|3118
5T62|1|A|U|3119
5T62|1|A|C|3120
5T62|1|A|U|3121
5T62|1|A|A|3122
5T62|1|A|A|3123
5T62|1|A|G|3124

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L9-A

Chain b

60S ribosomal protein L16-A

Chain z

Ubiquitin-60S ribosomal protein L40