HL_5T6R_022

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5T6R|1|A|C|959, 5T6R|1|A|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.1704

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5T6R|1|A|C|958
5T6R|1|A|C|959
5T6R|1|A|U|960
5T6R|1|A|C|961
5T6R|1|A|A|962
5T6R|1|A|G|963

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain Q

60S ribosomal protein L42-A

Chain n

60S ribosomal protein L28

Chain o

60S ribosomal protein L29