HL_5T6R_039

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

5T6R|1|A|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.4173

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5T6R|1|A|C|1759
5T6R|1|A|A|1760
5T6R|1|A|C|1761
5T6R|1|A|C|1762
5T6R|1|A|U|1763
5T6R|1|A|U|1764
5T6R|1|A|U|1765
5T6R|1|A|G|1766

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain h

60S ribosomal protein L22-A