HL_5T6R_050

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

5T6R|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T6R_050 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.0869

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5T6R|1|A|U|2292
5T6R|1|A|C|2293
5T6R|1|A|U|2294
5T6R|1|A|A|2295
5T6R|1|A|A|2296
5T6R|1|A|U|2297
5T6R|1|A|U|2298
5T6R|1|A|A|2299
5T6R|1|A|G|2300

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain i

60S ribosomal protein L23-A