HL_5T7V_004

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5T7V|1|A|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_004 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.3374

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5T7V|1|A|G|267
5T7V|1|A|G|268
5T7V|1|A|U|269
5T7V|1|A|A|270
5T7V|1|A|A|271
5T7V|1|A|C|272
5T7V|1|A|G|273
5T7V|1|A|G|274
5T7V|1|A|C|275

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S8

30S ribosomal protein S17

Chain SA

30S ribosomal protein S20