HL_5T7V_005

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_005 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1508

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5T7V|1|A|U|304
5T7V|1|A|G|305
5T7V|1|A|A|306
5T7V|1|A|G|307
5T7V|1|A|A|308
5T7V|1|A|G|309

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S8

30S ribosomal protein S17

Chain SC

30S ribosomal protein S4

Chain SD

30S ribosomal protein S5