Motif HL_34789.1 Version HL_34789.1 of this group appears in releases 4.0 to 4.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6	2-4	2-5	2-6
1	HL_8GLP_051	8GLP	0.4176	1	GNRA (H)	L5	LSU rRNA	C	3668	G	3669	C	3670	G	3671	G	3672	G	3674	cWW
2	HL_8P9A_192	8P9A	0.5348	1	GNRA related	sR	SSU rRNA	G	154	U	155	A	156	A	157	U	158	C	160	cWW
3	HL_8CRE_193	8CRE	0.4702	1	GNRA related	CM	SSU rRNA	G	152	U	153	A	154	A	155	U	156	C	158	cWW
4	HL_8GLP_087	8GLP	0.4136	1	GNRA related (H)	S2	SSU rRNA	G	156	U	157	A	158	A2M	159	U	160	C	162	cWW
5	HL_8B0X_059	8B0X	0.3879	0	GNRA (H)	a	LSU rRNA	U	1224	G	1225	U	1226	G	1227	A	1228	G	1229	cWW
6	HL_7A0S_031	7A0S	0.4449	0	GNRA	X	LSU rRNA	C	1235	G	1236	G	1237	A	1238	A	1239	G	1240	cWW
7	HL_4WF9_031	4WF9	0.3776	0	GNRA	X	LSU rRNA	C	1260	G	1261	U	1262	A	1263	A	1264	G	1265	cWW
8	HL_8B0X_029	8B0X	0.4302	0	GNRA (H)	A	SSU rRNA	G	1515	2MG	1516	G	1517	MA6	1518	MA6	1519	C	1520	cWW
9	HL_4LFB_032	4LFB	0.4486	0	GNRA	A	SSU rRNA	C	1515	G	1516	G	1517	MA6	1518	MA6	1519	G	1520	cWW
10	HL_8P9A_225	8P9A	0.4798	0	GNRA variation	sR	SSU rRNA	G	1778	U	1779	G	1780	A	1781	A	1782	C	1783	cWW
11	HL_8GLP_117	8GLP	0.4430	0	GNRA variation (H)	S2	SSU rRNA	G	1847	U	1848	G	1849	MA6	1850	MA6	1851	C	1852	cWW
12	HL_8CRE_225	8CRE	0.4575	0	GNRA variation	CM	SSU rRNA	G	1765	U	1766	G	1767	A	1768	A	1769	C	1770	cWW
13	HL_9DFE_033	9DFE	0.4252	0	GNRA	1A	LSU rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW
14	HL_8B0X_062	8B0X	0.4512	0	GNRA (H)	a	LSU rRNA	C	1365	G	1366	A	1367	A	1368	A	1369	G	1370	cWW
15	HL_4WF9_034	4WF9	0.5546	0	GNRA	X	LSU rRNA	C	1400	G	1401	A	1402	C	1403	A	1404	G	1405	cWW
16	HL_7A0S_034	7A0S	0.5631	0	GNRA variation	X	LSU rRNA	C	1376	G	1377	A	1378	A	1379	C	1380	G	1381	cWW
17	HL_1JID_001	1JID	0.4434	0	GNRA variation	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
18	HL_1MFQ_001	1MFQ	0.4607	0	GNRA variation	A	SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
19	HL_4LFB_033	4LFB	0.5152	0	GNRA variation	A	SSU rRNA	C	522	A	523	G	524	C	525	C	526	7MG	527	cWW
20	HL_8B0X_099	8B0X	0.4521	0	GNRA variation (H)	A	SSU rRNA	C	522	A	523	G	524	C	525	C	526	G7M	527	cWW
21	HL_8CRE_199	8CRE	0.5721	0	GNRA variation	CM	SSU rRNA	U	366	A	367	A	368	G	369	G	370	G	371	cWW
22	HL_8GLP_092	8GLP	0.4990	0		S2	SSU rRNA	U	416	C	417	A	418	G	419	G	420	G	421	cWW
23	HL_4QLM_001	4QLM	0.3368	0	GNRA	A	cyclic di-AMP riboswitch	C	54	G	55	A	56	A	57	A	58	G	59	cWW		ntSH
24	HL_7A0S_005	7A0S	0.2852	0	GNRA	X	LSU rRNA	C	146	G	147	C	148	A	149	A	150	G	151	cWW		ntSH
25	HL_9AXU_061	9AXU	0.2883	0	GNRA (H)	2	LSU rRNA	C	3121	G	3122	A	3123	G	3124	A	3125	G	3126	cWW		tSH
26	HL_1M5K_003	1M5K	0.2778	0	GNRA	B	RNA HAIRPIN RIBOZYME	G	74	G	75	A	76	A	77	A	78	C	79	cWW		ntSH
27	HL_8GLP_123	8GLP	0.2833	0	GNRA (H)	L5	LSU rRNA	A2M	3724	G	3725	A	3726	A	3727	A	3728	PSU	3729	cWW
28	HL_8P9A_145	8P9A	0.3368	0	GNRA variation	AR	LSU rRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
29	HL_9AXU_030	9AXU	0.2916	0	GNRA variation (H)	2	LSU rRNA	G	1578	A	1579	A	1580	G	1581	C	1582	U	1583	cWW
30	HL_8OI5_029	8OI5	0.3011	0	GNRA variation (H)	1	LSU rRNA	G	1540	A	1541	A	1542	G	1543	C	1544	U	1545	cWW
31	HL_8GLP_035	8GLP	0.3126	0	GNRA variation (H)	L5	LSU rRNA	C	2458	G	2459	A	2460	G	2461	C	2462	G	2463	cWW
32	HL_1U6B_004	1U6B	0.3794	0	GNRA variation	B	197-MER	C	153	A	154	A	155	A	156	C	157	G	158	cWW
33	HL_9L6Y_001	9L6Y	0.2176	0	GNRA	B	CS2 RNA	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntsS
34	HL_5VW1_003	5VW1	0.1874	0	GNRA with GA tSW pair	C	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntsS
35	HL_6LAX_002	6LAX	0.2829	0	GNRA	A	SAM-VI (S-adenosyl methionine) riboswitch aptamer	U	42	G	43	A	44	A	45	A	46	A	47	cWW		ntsS
36	HL_4OQU_004	4OQU	0.2759	0	GNRA	A	SAM-I/IV riboswitch	C	76	G	77	A	78	G	79	A	80	G	81	cWW
37	HL_4LFB_016	4LFB	0.2627	0	GNRA	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
38	HL_6SVS_001	6SVS	0.2719	0	GNRA	A	RNA (79-mer)	C	26	G	27	A	28	A	29	A	30	G	31	cWW
39	HL_8B0X_015	8B0X	0.2762	0	GNRA (H)	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
40	HL_8CRE_211	8CRE	0.2528	0	GNRA	CM	SSU rRNA	C	922	G	923	A	924	A	925	A	926	G	927	cWW
41	HL_8GLP_103	8GLP	0.2357	0	GNRA (H)	S2	SSU rRNA	C	994	G	995	A	996	A	997	A	998	G	999	cWW
42	HL_8P9A_210	8P9A	0.2368	0	GNRA	sR	SSU rRNA	C	937	G	938	A	939	A	940	A	941	G	942	cWW
43	HL_6M0X_001	6M0X	0.1861	0	GNRA	B	RNA (71-MER)	C	32	G	33	A	34	A	35	A	36	G	37	cWW
44	HL_6MJ0_003	6MJ0	0.1662	0	GNRA with GA tSW pair (H)	A	tRNA-like 3' UTR element	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSH
45	HL_8B0X_084	8B0X	0.2343	0	GNRA (H)	a	LSU rRNA	U	2360	G	2361	A	2362	C	2363	G	2364	G	2365	cWW
46	HL_8P9A_125	8P9A	0.1566	0	GNRA	AR	LSU rRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW
47	HL_5FQ5_001	5FQ5	0.1695	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
48	HL_7QQX_001	7QQX	0.2298	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
49	HL_7A0S_047	7A0S	0.1518	0	GNRA	X	LSU rRNA	U	1856	G	1857	C	1858	A	1859	A	1860	G	1861	cWW
50	HL_6CB3_006	6CB3	0.2038	0	GNRA	B	RNA (99-MER)	C	76	G	77	A	78	A	79	A	80	G	81	cWW
51	HL_6GYV_006	6GYV	0.2084	0		A	Lariat-capping ribozyme	C	181	G	182	A	183	A	184	A	185	G	186	cWW
52	HL_3NPQ_001	3NPQ	0.1857	0	GNRA	A	SAH (S-adenosyl-L-homocysteine) riboswitch aptamer	C	20	G	21	A	22	G	23	A	24	G	25	cWW
53	HL_7MKY_002	7MKY	0.1389	0	GNRA	A	RNA (66-MER)	G	40	G	41	A	42	A	43	A	44	C	45	cWW
54	HL_6U8D_002	6U8D	0.1235	0	GNRA	A	JIIIabc RNA (68-MER)	G	180	G	198	A	199	A	200	A	201	C	219	cWW
55	HL_2OIU_003	2OIU	0.1663	0	GNRA	P	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW
56	HL_3E5C_002	3E5C	0.1947	0	GNRA	A	SMK box (SAM-III) Riboswitch	C	41	G	42	A	43	A	44	A	45	G	46	cWW
57	HL_8VU0_002	8VU0	0.1808	0	GNRA	C	tRNA	C	33	G	34	A	35	A	36	A	37	G	38	cWW
58	HL_9E6Q_016	9E6Q	0.1697	0	GNRA (H)	1	LSU rRNA	C	518	G	519	G	520	A	521	A	522	G	523	cWW
59	HL_4LVW_002	4LVW	0.2147	0	GNRA	A	THF riboswitch	C	58	G	59	A	60	G	61	A	62	G	63	cWW
60	HL_9E6Q_070	9E6Q	0.1694	0	GNRA (H)	2	5S rRNA	C	93	G	94	C	95	G	96	A	97	G	98	cWW
61	HL_6CB3_005	6CB3	0.1549	0	GNRA	B	RNA (99-MER)	G	50	G	51	A	52	A	53	A	54	C	55	cWW
62	HL_4OQU_001	4OQU	0.1651	0	GNRA	A	SAM-I/IV riboswitch	G	13	G	14	A	15	G	16	A	17	C	18	ncWW
63	HL_8GLP_114	8GLP	0.1882	0	GNRA (H)	S2	SSU rRNA	C	1565	G	1566	G	1567	C	1568	A	1569	G	1570	cWW		ntSH
64	HL_1UN6_004	1UN6	0.1681	0	GNRA	F	5S RIBOSOMAL RNA	G	82	G	83	A	84	A	85	A	86	C	94	cWW		ntSH
65	HL_9DFE_045	9DFE	0.1596	0	GNRA	1A	LSU rRNA	U	1864	G	1865	C	1866	A	1876	A	1877	G	1878	cWW
66	HL_8P9A_170	8P9A	0.1375	0	GNRA	AR	LSU rRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW
67	HL_8OI5_055	8OI5	0.1175	0	GNRA (H)	1	LSU rRNA	U	2716	G	2717	A	2718	A	2719	A	2720	G	2721	cWW
68	HL_8GLP_064	8GLP	0.1211	0	GNRA (H)	L5	LSU rRNA	U	4321	G	4322	A	4323	A	4324	A	4325	G	4326	cWW
69	HL_9AXU_055	9AXU	0.1171	0	GNRA (H)	2	LSU rRNA	U	2839	G	2840	A	2841	A	2842	A	2843	G	2844	cWW
70	HL_8P9A_128	8P9A	0.1514	0	GNRA	AR	LSU rRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW
71	HL_8GLP_018	8GLP	0.1634	0	GNRA (H)	L5	LSU rRNA	U	1389	G	1390	A	1391	A	1392	G	1393	G	1394	cWW
72	HL_8OI5_015	8OI5	0.1395	0	GNRA (H)	1	LSU rRNA	U	705	G	706	A	707	A	708	A	709	G	710	cWW
73	HL_9AXU_015	9AXU	0.1362	0	GNRA (H)	2	LSU rRNA	U	734	G	735	A	736	A	737	A	738	G	739	cWW
74	HL_6DME_001	6DME	0.1589	0	GNRA	A	ppGpp Riboswitch	C	25	G	26	A	27	G	28	A	29	G	30	cWW
75	HL_8B0X_085	8B0X	0.1473	0	GNRA (H)	a	LSU rRNA	C	2378	G	2379	A	2380	A	2381	A	2382	G	2383	cWW
76	HL_4WF9_054	4WF9	0.1509	0	GNRA	X	LSU rRNA	C	2401	G	2402	A	2403	A	2404	A	2405	G	2406	cWW
77	HL_7A0S_057	7A0S	0.1402	0	GNRA	X	LSU rRNA	G	2353	G	2354	A	2355	A	2356	A	2357	C	2358	cWW
78	HL_9DFE_056	9DFE	0.1487	0	GNRA	1A	LSU rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW		ntSH
79	HL_5DDP_001	5DDP	0.1282	0	GNRA	A	glnA	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
80	HL_4LFB_010	4LFB	0.1306	0	GNRA	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
81	HL_8B0X_009	8B0X	0.1074	0	GNRA (H)	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW		ntSH
82	HL_5F9F_003	5F9F	0.1005	0	GNRA	F	RNA (24-mer)	A	10	G	11	U	12	G	13	A	14	U	15	cWW
83	HL_5B2T_001	5B2T	0.0816	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
84	HL_8GLP_118	8GLP	0.0000	0	GNRA (H)	L5	LSU rRNA	U	393	G	394	A	395	A	396	G	397	A2M	398	cWW
85	HL_6N2V_001	6N2V	0.0850	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	G	24	G	25	A	26	A	27	A	28	C	29	cWW
86	HL_8B0X_050	8B0X	0.0841	0	GNRA (H)	a	LSU rRNA	G	631	G	632	A	633	A	634	A	635	C	636	cWW
87	HL_9E6Q_020	9E6Q	0.0853	0	GNRA (H)	1	LSU rRNA	G	714	G	715	A	716	A	717	A	718	C	719	cWW
88	HL_9DFE_018	9DFE	0.1053	0	GNRA	1A	LSU rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW
89	HL_4V9F_060	4V9F	0.1029	0	GNRA	0	LSU rRNA	C	2411	G	2412	A	2413	A	2414	A	2415	G	2416	cWW
90	HL_7A0S_020	7A0S	0.1408	0	GNRA	X	LSU rRNA	C	640	G	641	A	642	A	643	A	644	G	645	cWW
91	HL_4WF9_065	4WF9	0.2047	0	GNRA	X	LSU rRNA	G	2876	G	2877	U	2878	G	2879	A	2880	C	2881	cWW
92	HL_7A0S_068	7A0S	0.1516	0	GNRA	X	LSU rRNA	A	2831	G	2832	C	2833	A	2834	A	2835	U	2836	cWW		ntSH
93	HL_8B0X_096	8B0X	0.1303	0	GNRA (H)	a	LSU rRNA	A	2860	G	2861	C	2862	G	2863	A	2864	U	2865	cWW
94	HL_4LFB_028	4LFB	0.1574	0	GNRA	A	SSU rRNA	G	1265	G	1266	C	1267	A	1268	A	1269	C	1270	cWW
95	HL_4WF9_020	4WF9	0.1500	0	GNRA	X	LSU rRNA	C	674	G	675	A	676	A	677	A	678	G	679	cWW
96	HL_7A0S_070	7A0S	0.1837	0	GNRA	Y	5S rRNA	C	88	G	89	C	90	A	91	G	92	G	93	cWW
97	HL_9DFE_069	9DFE	0.2274	0	GNRA	1B	5S rRNA	G	86	G	87	C	88	G	89	A	90	C	91	cWW
98	HL_3G9C_012	3G9C	0.2137	0		R	glmS ribozyme	G	108	G	109	U	110	G	111	A	112	C	113	cWW
99	HL_4V9F_033	4V9F	0.2853	0	GNRA	0	LSU rRNA	C	1326	G	1327	A	1328	G	1329	A	1330	G	1331	cWW
100	HL_4WF9_059	4WF9	0.2536	0	GNRA	X	LSU rRNA	C	2621	G	2622	U	2623	G	2624	A	2625	G	2626	cWW
101	HL_9E6Q_017	9E6Q	0.2581	0	GNRA (H)	1	LSU rRNA	G	601	G	602	U	603	G	604	A	605	C	606	cWW
102	HL_2BTE_007	2BTE	0.2423	0	GNRA (H)	E	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW
103	HL_8P9A_147	8P9A	0.2983	0	GNRA	AR	LSU rRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW
104	HL_8OI5_032	8OI5	0.3028	0	GNRA (H)	1	LSU rRNA	G	1630	G	1631	C	1632	A	1633	A	1634	C	1635	cWW
105	HL_9AXU_033	9AXU	0.2871	0	GNRA (H)	2	LSU rRNA	G	1669	G	1670	C	1671	A	1672	A	1673	C	1674	cWW
106	HL_8GLP_040	8GLP	0.2939	0	GNRA (H)	L5	LSU rRNA	G	2578	G	2579	U	2580	A	2581	A	2582	C	2583	cWW
107	HL_8OI5_026	8OI5	0.2854	0	GNRA (H)	1	LSU rRNA	U	1399	G	1400	U	1401	A	1402	A	1403	A	1404	cWW
108	HL_8P9A_142	8P9A	0.2683	0	GNRA	AR	LSU rRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW
109	HL_9AXU_027	9AXU	0.2489	0	GNRA (H)	2	LSU rRNA	C	1437	G	1438	U	1439	G	1440	A	1441	G	1442	cWW
110	HL_2Z75_004	2Z75	0.2340	0	GNRA	B	glmS ribozyme	G	113	G	114	C	115	G	116	A	117	C	118	cWW
111	HL_8GLP_032	8GLP	0.2356	0	GNRA (H)	L5	LSU rRNA	C	2317	G	2318	C	2319	G	2320	G	2321	G	2322	cWW
112	HL_9E6Q_035	9E6Q	0.2411	0		1	LSU rRNA	G	1554	G	1555	C	1556	A	1557	A	1558	C	1559	cWW
113	HL_9E6Q_030	9E6Q	0.2655	0	GNRA (H)	1	LSU rRNA	C	1349	G	1350	U	1351	G	1352	A	1353	G	1354	cWW
114	HL_8B0X_021	8B0X	0.2513	0	GNRA (H)	A	SSU rRNA	U	1076	G	1077	U	1078	G	1079	A	1080	A	1081	cWW
115	HL_4LFB_024	4LFB	0.2416	0	GNRA	A	SSU rRNA	C	1076	G	1077	U	1078	G	1079	A	1080	G	1081	cWW
116	HL_8P9A_217	8P9A	0.2331	0	GNRA	sR	SSU rRNA	A	1296	G	1297	U	1298	G	1299	A	1300	U	1301	cWW
117	HL_8CRE_218	8CRE	0.1949	0	GNRA	CM	SSU rRNA	A	1281	G	1282	U	1283	G	1284	A	1285	U	1286	cWW
118	HL_3IGI_003	3IGI	0.2065	0	GNRA	A	Group IIC intron	G	89	G	90	C	91	G	92	A	93	C	94	cWW
119	HL_8B0X_090	8B0X	0.1841	0	GNRA (H)	a	LSU rRNA	C	2598	G	2599	U	2600	G	2601	A	2602	G	2603	cWW
120	HL_4V9F_065	4V9F	0.1980	0	GNRA	0	LSU rRNA	C	2629	G	2630	U	2631	G	2632	A	2633	G	2634	cWW
121	HL_7KKV_001	7KKV	0.2062	0	GNRA	B	OLE* RNA	G	500	G	501	U	502	G	503	A	504	C	505	cWW
122	HL_9DFE_066	9DFE	0.1793	0	GNRA	1A	LSU rRNA	C	2856	G	2857	C	2858	G	2859	A	2860	G	2861	cWW
123	HL_7A0S_015	7A0S	0.2034	0	GNRA	X	LSU rRNA	C	473	G	474	U	475	G	476	A	477	G	478	cWW
124	HL_8OI5_060	8OI5	0.1851	0	GNRA (H)	1	LSU rRNA	C	2935	G	2936	U	2937	G	2938	A	2939	G	2940	cWW
125	HL_9AXU_060	9AXU	0.1967	0	GNRA (H)	2	LSU rRNA	C	3058	G	3059	U	3060	G	3061	A	3062	G	3063	cWW
126	HL_8GLP_069	8GLP	0.1839	0	GNRA (H)	L5	LSU rRNA	C	4540	G	4541	U	4542	G	4543	A	4544	G	4545	cWW
127	HL_8P9A_175	8P9A	0.1844	0	GNRA	AR	LSU rRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW
128	HL_8B0X_046	8B0X	0.1697	0	GNRA (H)	a	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
129	HL_4WF9_015	4WF9	0.1850	0	GNRA	X	LSU rRNA	C	508	G	509	U	510	G	511	A	512	G	513	cWW
130	HL_8B0X_025	8B0X	0.2035	0	GNRA (H)	A	SSU rRNA	C	1265	G	1266	C	1267	G	1268	A	1269	G	1270	cWW
131	HL_4V9F_017	4V9F	0.2202	0	GNRA	0	LSU rRNA	C	576	G	577	C	578	G	579	A	580	G	581	cWW
132	HL_4YAZ_003	4YAZ	0.2158	0	GNRA	R	Cyclic di-GMP-I riboswitch	C	25	G	26	C	27	G	28	A	29	G	30	cWW
133	HL_4WFL_003	4WFL	0.1842	0	GNRA	A	LSRP RNA	G	81	G	82	U	83	A	84	A	85	C	86	cWW
134	HL_9E6Q_015	9E6Q	0.2319	0	GNRA (H)	1	LSU rRNA	OMC	493	G	494	U	495	G	496	A	497	G	498	cWW
135	HL_8GLP_010	8GLP	0.1976	0	GNRA (H)	L5	LSU rRNA	C	368	G	369	U	370	A	371	A	372	G	373	cWW
136	HL_4V9F_015	4V9F	0.1950	0	GNRA	0	LSU rRNA	U	468	G	469	U	470	G	471	A	472	A	473	cWW
137	HL_8GLP_110	8GLP	0.2136	0	GNRA (H)	S2	SSU rRNA	A	1353	G	1354	C	1355	G	1356	A	1357	U	1358	cWW
138	HL_9AXU_010	9AXU	0.1945	0	GNRA (H)	2	LSU rRNA	A	365	G	366	U	367	G	368	A	369	U	370	cWW
139	HL_8P9A_122	8P9A	0.1892	0	GNRA	AR	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
140	HL_8OI5_010	8OI5	0.1915	0	GNRA (H)	1	LSU rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
141	HL_9DFE_061	9DFE	0.2239	0	GNRA	1A	LSU rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW		ntSH
142	HL_7A0S_062	7A0S	0.2201	0	GNRA	X	LSU rRNA	C	2573	G	2574	U	2575	G	2576	A	2577	G	2578	cWW
143	HL_9E6Q_061	9E6Q	0.2006	0	GNRA (H)	1	LSU rRNA	C	2708	G	2709	C	2710	G	2711	A	2712	G	2713	cWW
144	HL_9DFE_014	9DFE	0.1536	0	GNRA	1A	LSU rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
145	HL_9DFE_030	9DFE	0.2147	0	GNRA	1A	LSU rRNA	C	1222	G	1223	C	1224	G	1225	A	1226	G	1227	cWW
146	HL_4V9F_040	4V9F	0.2340	0	GNRA	0	LSU rRNA	G	1628	G	1629	A	1630	A	1631	A	1632	C	1633	cWW		ntSH
147	HL_4LFB_003	4LFB	0.2511	0	GNRA	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		ntSH
148	HL_8OI5_018	8OI5	0.1809	0	GNRA (H)	1	LSU rRNA	G	840	G	841	A	842	A	843	A	844	C	845	cWW		ntSH
149	HL_9E6Q_046	9E6Q	0.2066	0	GNRA (H)	1	LSU rRNA	C	1942	G	1943	U	1944	A	1945	A	1946	OMG	1947	cWW		ntSH
150	HL_4V9F_048	4V9F	0.2201	0	GNRA	0	LSU rRNA	C	1862	G	1863	C	1864	A	1865	A	1866	G	1867	cWW		ntSH
151	HL_8P9A_214	8P9A	0.1815	0	GNRA	sR	SSU rRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	cWW		ntSH
152	HL_4LFB_020	4LFB	0.1972	0	GNRA	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		ntSH
153	HL_8B0X_018	8B0X	0.1858	0	GNRA (H)	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW		ntSH
154	HL_8CRE_215	8CRE	0.1743	0	GNRA	CM	SSU rRNA	C	1106	G	1107	C	1108	A	1109	A	1110	G	1111	cWW		ntSH
155	HL_8GLP_107	8GLP	0.1527	0		S2	SSU rRNA	U	1178	G	1179	C	1180	A	1181	A	1182	A	1183	cWW		ntSH
156	HL_4NLF_001	4NLF	0.1740	0	GNRA	A	23S ribosomal RNA Sarcin Ricin Loop	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		ntSH
157	HL_4V9F_072	4V9F	0.1736	0	GNRA	9	5S rRNA	C	89	G	90	C	91	G	92	A	93	G	94	cWW		ntSH
158	HL_7QQP_001	7QQP	0.1597	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
159	HL_7QR0_001	7QR0	0.1500	0	GNRA	A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW		ntSH
160	HL_4WF9_060	4WF9	0.1655	0	GNRA	X	LSU rRNA	C	2685	G	2686	A	2687	G	2688	A	2689	G	2690	cWW		ntSH
161	HL_4AOB_002	4AOB	0.1481	0	GNRA	A	SAM-I riboswitch	A	49	A	50	A	51	A	52	A	53	U	54	cWW		tSH
162	HL_7A0S_016	7A0S	0.2171	0	GNRA	X	LSU rRNA	C	498	G	499	G	500	G	501	A	502	G	503	cWW		ntSH
163	HL_4WF9_016	4WF9	0.2110	0	GNRA	X	LSU rRNA	C	533	G	534	G	535	A	536	A	537	G	538	cWW		ntSH
164	HL_9DFE_015	9DFE	0.1906	0	GNRA	1A	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		ntSH
165	HL_4W90_003	4W90	0.1814	0	GNRA	C	cyclic di-AMP riboswitch	C	82	G	83	A	84	A	85	A	86	G	87	cWW		ntSH
166	HL_3CUL_001	3CUL	0.1874	0	GNRA	C	RNA (92-MER)	C	7	G	8	A	9	A	10	A	11	G	12	cWW		ntSH
167	HL_5DCV_002	5DCV	0.1488	0	GNRA	D	RNA (47-MER)	G	26	G	27	A	28	A	29	A	30	C	31	cWW		ntSH
168	HL_8SYK_004	8SYK	0.1577	0	GNRA	A	RNA device 43 truncation mutant 3 (U100C)	C	79	G	80	A	81	A	82	A	83	G	84	cWW		ntSH
169	HL_3P22_001	3P22	0.2289	0	GNRA	A	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW		ntSH
170	HL_7QQP_003	7QQP	0.1733	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
171	HL_9FN3_004	9FN3	0.1997	0	GNRA	B	SAMURI-ProSeDMA	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
172	HL_4BW0_001	4BW0	0.1876	0	GNRA	A	HMKT-7	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
173	HL_9FN2_004	9FN2	0.1850	0	GNRA	B	SAMURI-SAM	C	42	G	43	A	44	A	45	A	46	G	47	cWW		ntSH
174	HL_1NBS_007	1NBS	0.1795	0	GNRA	B	RNase P class B	A	204	G	205	A	206	A	207	A	208	U	209	cWW		ntSH
175	HL_3V7E_006	3V7E	0.1387	0	GNRA (H)	D	SAM-I riboswitch	G	305	G	306	A	307	A	308	A	309	C	310	cWW		ntSH
176	HL_4FRG_002	4FRG	0.1436	0	GNRA	B	cobalamin riboswitch aptamer domain	C	46	G	47	A	48	A	49	A	50	G	51	cWW		ntSH
177	HL_5Y7M_002	5Y7M	0.1361	0	GNRA	D	RNA (52-MER)	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
178	HL_4LFB_027	4LFB	0.1595	0	GNRA	A	SSU rRNA	C	1165	G	1166	A	1167	A	1168	A	1169	G	1171	cWW		ntSH
179	HL_5D5L_001	5D5L	0.1505	0	GNRA	A	PreQ1-II riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW		ntSH
180	HL_2R8S_001	2R8S	0.1461	0	GNRA	R	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW		ntSH
181	HL_5UZ6_001	5UZ6	0.1132	0	GNRA	A	RNA (25-MER)	C	15	G	16	A	17	A	18	A	19	G	20	cWW		ntSH
182	HL_8HZE_002	8HZE	0.1094	0	GNRA	B	RNA (36-MER)	C	19	G	20	A	21	A	22	A	23	G	24	cWW		ntSH
183	HL_5VCI_001	5VCI	0.1415	0	GNRA	A	RNA (22-mer)	C	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
184	HL_4PLX_001	4PLX	0.1393	0	GNRA	A	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
185	HL_7WIE_001	7WIE	0.1535	0	GNRA	V	THF-II riboswitch (folE RNA)	C	31	G	32	A	33	A	34	A	35	G	37	cWW		ntSH
186	HL_1KH6_002	1KH6	0.1687	0	GNRA	A	JIIIabc	C	28	G	29	A	30	A	31	A	32	G	33	cWW		ntSH
187	HL_1U6B_001	1U6B	0.1706	0	GNRA	B	197-MER	G	23	G	24	A	25	A	26	A	27	C	28	cWW		ntSH
188	HL_3IGI_006	3IGI	0.1085	0	GNRA	A	Group IIC intron	G	274	G	275	A	276	A	277	A	278	C	279	cWW		ntSH
189	HL_9DID_001	9DID	0.1381	0	GNRA	A	frameshifting pseudoknot RNA	C	61	G	62	A	63	A	64	A	65	G	66	cWW		ntSH
190	HL_9E6Q_005	9E6Q	0.1120	0		1	LSU rRNA	C	149	G	150	U	151	A	152	A	153	G	154	cWW		ntSH
191	HL_2OIU_001	2OIU	0.1393	0	GNRA	P	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW		ntSH
192	HL_4LCK_004	4LCK	0.1433	0	GNRA	B	tRNA	C	71	G	72	A	73	A	74	A	75	G	76	cWW		ntSH
193	HL_8P9A_123	8P9A	0.1175	0	GNRA	AR	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW		ntSH
194	HL_9DFE_062	9DFE	0.1491	0	GNRA	1A	LSU rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW		tSH
195	HL_7OZQ_004	7OZQ	0.1130	0	GNRA	H	RNA	C	14	G	15	A	16	A	17	A	18	G	19	cWW		ntSH
196	HL_7D7W_001	7D7W	0.1088	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW		ntSH
197	HL_5FJC_002	5FJC	0.1287	0	GNRA	A	SAM-I riboswitch	A	49	G	50	A	51	A	52	A	53	U	54	cWW		ntSH
198	HL_9DXL_001	9DXL	0.1175	0	GNRA	A	RhoBAST aptamer	G	7	G	8	A	9	A	10	A	11	C	12	cWW		ntSH
199	HL_4OQU_003	4OQU	0.1232	0	GNRA	A	SAM-I/IV riboswitch	G	57	G	58	A	59	G	60	A	61	C	62	cWW		ntSH
200	HL_9L6X_002	9L6X	0.1383	0	GNRA	D	CS1 RNA	C	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
201	HL_8D28_002	8D28	0.1407	0	GNRA	B	RNA (33-MER)	C	13	G	14	A	15	A	16	A	17	G	18	cWW		ntSH
202	HL_3RW6_001	3RW6	0.1459	0	GNRA	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	G	27	G	28	A	29	A	30	A	31	C	32	cWW		tSH
203	HL_5B2T_003	5B2T	0.1542	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
204	HL_5B2P_001	5B2P	0.1731	0	GNRA	B	Guide RNA	C	35	G	36	A	37	A	38	A	39	G	40	cWW		tSH
205	HL_5X2G_001	5X2G	0.1395	0	GNRA	B	sgRNA	U	32	G	33	A	34	A	35	A	36	A	37	cWW		ntSH
206	HL_6TFF_001	6TFF	0.1344	0	GNRA	A	nadA RNA	C	27	G	28	A	29	A	30	A	31	G	32	cWW		ntSH
207	HL_9DID_002	9DID	0.1403	0	GNRA	B	frameshifting pseudoknot RNA	C	61	G	62	A	63	A	64	A	65	G	66	cWW		ntSH
208	HL_8B0X_002	8B0X	0.1447	0	GNRA (H)	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW		ntSH
209	HL_1MZP_001	1MZP	0.1506	0	GNRA	B	fragment of 23S rRNA	C	25	G	26	C	27	A	28	A	29	G	30	cWW		ntSH
210	HL_9E6Q_056	9E6Q	0.1088	0	GNRA (H)	1	LSU rRNA	G	2489	G	2490	A	2491	A	2492	A	2493	C	2494	cWW		ntSH
211	HL_8P9A_176	8P9A	0.1861	0	GNRA	AR	LSU rRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW		ntSH
212	HL_4V9F_066	4V9F	0.1593	0	GNRA	0	LSU rRNA	C	2695	G	2696	A	2697	G	2698	A	2699	G	2700	cWW		ntSH
213	HL_8OI5_061	8OI5	0.1451	0	GNRA (H)	1	LSU rRNA	C	2997	G	2998	A	2999	G	3000	A	3001	G	3002	cWW		ntSH
214	HL_8GLP_070	8GLP	0.1476	0	GNRA (H)	L5	LSU rRNA	C	4603	G	4604	A	4605	G	4606	A	4607	G	4608	cWW		ntSH
215	HL_8B0X_091	8B0X	0.1639	0		a	LSU rRNA	C	2662	G	2663	A	2664	G	2665	A	2666	G	2667	cWW		ntSH
216	HL_9E6Q_062	9E6Q	0.1549	0	GNRA (H)	1	LSU rRNA	C	2773	G	2774	A	2775	G	2776	A	2777	G	2778	cWW		ntSH
217	HL_7A0S_063	7A0S	0.1712	0	GNRA	X	LSU rRNA	C	2637	G	2638	A	2639	G	2640	A	2641	G	2642	cWW		tSH
218	HL_7R97_001	7R97	0.1675	0	GNRA	C	RNA (28-MER)	C	11	G	12	C	13	A	14	A	15	G	16	cWW		tSH
219	HL_9DFE_044	9DFE	0.1418	0	GNRA	1A	LSU rRNA	C	1806	G	1807	U	1808	A	1809	A	1810	G	1811	cWW		ntSH
220	HL_4V9F_020	4V9F	0.1071	0	GNRA	0	LSU rRNA	G	690	G	691	A	692	A	693	A	694	C	695	cWW		ntSH
221	HL_8B0X_003	8B0X	0.1595	0	GNRA (H)	A	SSU rRNA	C	186	G	187	C	188	A	189	A	190	G	191	cWW		ntSH
222	HL_4V9F_009	4V9F	0.1380	0	GNRA	0	LSU rRNA	C	252	U	253	C	254	A	255	C	256	G	257	cWW		ntSH
223	HL_4K50_001	4K50	0.1221	0	GNRA	B	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW		ntSH
224	HL_4Y1M_003	4Y1M	0.1319	0	GNRA	B	E. coli yybP-ykoY riboswitch	U	55	G	56	A	57	A	58	A	59	A	60	cWW		ntSH
225	HL_6N2V_002	6N2V	0.1413	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	56	G	57	A	58	A	59	A	60	G	61	cWW		ntSH
226	HL_4Y1M_002	4Y1M	0.1416	0	GNRA	B	E. coli yybP-ykoY riboswitch	C	24	G	25	A	26	A	27	A	28	G	29	cWW		ntSH
227	HL_6N2V_003	6N2V	0.1598	0	GNRA	A	X. oryzae Mn riboswitch optimized construct	C	76	G	77	A	78	A	79	A	80	G	81	cWW		ntSH
228	HL_3LQX_001	3LQX	0.1725	0	GNRA	B	SRP RNA	C	153	G	154	A	155	A	156	A	157	G	158	cWW		tSH
229	HL_1Q96_001	1Q96	0.1629	0	GNRA	A	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW		ntSH
230	HL_4V9F_023	4V9F	0.1536	0	GNRA	0	LSU rRNA	C	804	G	805	A	806	A	807	A	808	G	809	cWW		ntSH
231	HL_8GLP_022	8GLP	0.1793	0	GNRA (H)	L5	LSU rRNA	G	1561	G	1562	A	1563	A	1564	A	1565	C	1566	cWW		ntSH
232	HL_8P9A_129	8P9A	0.1700	0	GNRA	AR	LSU rRNA	C	732	G	733	C	734	A	735	A	736	G	737	cWW		ntSH
233	HL_8P9A_185	8P9A	0.1449	0	GNRA	AS	5S rRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW		ntSH
234	HL_8OI5_070	8OI5	0.1565	0	GNRA	3	5S rRNA	G	88	G	89	A	90	G	91	A	92	C	93	cWW		ntSH
235	HL_8QYX_073	8QYX	0.1342	0	GNRA (H)	B2	5S rRNA	G	86	G	87	A	88	G	89	A	90	C	91	cWW		ntSH
236	HL_9AXU_070	9AXU	0.1300	0	GNRA (H)	3	5S rRNA	G	86	G	87	A	88	G	89	A	90	C	91	cWW		ntSH
237	HL_4R4V_004	4R4V	0.1370	0	GNRA	A	VS ribozyme RNA	C	735	G	736	U	737	A	738	A	739	G	740	cWW		ntSH
238	HL_8HZL_002	8HZL	0.1502	0	GNRA	B	RNA (84-MER)	C	49	G	50	A	51	A	52	A	53	G	54	cWW		ntSH
239	HL_1RLG_002	1RLG	0.1455	0	GNRA	D	25-MER	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
240	HL_4V9F_054	4V9F	0.1354	0	GNRA	0	LSU rRNA	C	2248	G	2249	G	2250	G	2251	A	2252	G	2253	cWW		ntSH
241	HL_9AXU_011	9AXU	0.1126	0	GNRA (H)	2	LSU rRNA	U	390	G	391	A	392	A	393	A	394	A	395	cWW		ntSH
242	HL_9E6Q_021	9E6Q	0.1667	0		1	LSU rRNA	G	736	G	737	C	738	A	739	A	740	C	741	cWW		ntSH
243	HL_9E6Q_050	9E6Q	0.1722	0	GNRA (H)	1	LSU rRNA	C	2324	G	2325	C	2326	A	2327	A	2328	G	2329	cWW		ntSH
244	HL_5F9R_003	5F9R	0.2185	0	GNRA	A	tracrRNA	U	90	G	91	A	92	A	93	A	94	A	95	cWW		ntSH
245	HL_4XCO_004	4XCO	0.1800	0		M	SRP RNA	C	208	G	209	G	210	A	211	A	212	G	213	cWW		ntSH
246	HL_7QQX_003	7QQX	0.1915	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
247	HL_8P9A_131	8P9A	0.1595	0	GNRA	AR	LSU rRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW		ntSH
248	HL_3PDR_001	3PDR	0.1883	0	GNRA	X	M-box riboswitch (ykoK leader)	C	68	C	69	A	70	A	71	A	72	G	73	cWW		ntSH
249	HL_4ENC_002	4ENC	0.1503	0	GNRA	A	Fluoride riboswitch	U	28	G	29	A	30	A	31	A	32	A	33	cWW		ntSH
250	HL_4AOB_003	4AOB	0.1208	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		ntSH
251	HL_3MXH_001	3MXH	0.0941	0	GNRA	R	c-di-GMP riboswitch	C	31	G	32	A	33	A	34	A	35	G	36	cWW		ntSH
252	HL_5FJC_003	5FJC	0.1183	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW		ntSH
253	HL_3IWN_001	3IWN	0.1274	0	GNRA	A	C-di-GMP riboswitch	C	21	G	22	A	23	A	24	A	25	G	26	cWW		ntSH
254	HL_3NMU_002	3NMU	0.1470	0	GNRA	E	RNA (34-MER)	C	18	G	19	A	20	A	21	A	22	G	23	cWW		ntSH
255	HL_1MFQ_002	1MFQ	0.2063	0	GNRA	A	SRP RNA	G	197	G	198	A	199	A	200	A	201	C	202	cWW		tSH
256	HL_6JDV_002	6JDV	0.2156	0	GNRA	B	CRISPR RNA direct repeat element	U	86	G	87	A	88	A	89	A	90	A	91	cWW		tSH
257	HL_3D0U_004	3D0U	0.1849	0	GNRA	A	Lysine Riboswitch RNA	C	142	G	143	A	144	A	145	A	146	G	147	cWW		ntSH
258	HL_8KAJ_002	8KAJ	0.1571	0	GNRA	I	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW
259	HL_8OI5_011	8OI5	0.1010	0	GNRA (H)	1	LSU rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW
260	HL_5VW1_001	5VW1	0.1008	0	GNRA	C	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
261	HL_3NVI_001	3NVI	0.1324	0		E	RNA (24-mer)	C	9	G	10	A	11	A	12	A	13	G	14	cWW		ntSH
262	HL_8P9A_213	8P9A	0.1214	0	GNRA	sR	SSU rRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW
263	HL_8CRE_214	8CRE	0.1392	0	GNRA	CM	SSU rRNA	A	1069	G	1070	A	1071	A	1072	A	1073	U	1074	cWW
264	HL_8GLP_106	8GLP	0.1571	0	GNRA (H)	S2	SSU rRNA	G	1141	G	1142	A	1143	A	1144	A	1145	C	1146	cWW
265	HL_8P9A_159	8P9A	0.1455	0	GNRA	AR	LSU rRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW
266	HL_9AXU_044	9AXU	0.1227	0	GNRA (H)	2	LSU rRNA	A	2308	G	2309	A	2310	A	2311	A	2312	U	2313	cWW
267	HL_8OI5_043	8OI5	0.1007	0	GNRA (H)	1	LSU rRNA	A	2198	G	2199	A	2200	A	2201	A	2202	U	2203	cWW
268	HL_3SUX_002	3SUX	0.1334	0	GNRA	X	THF riboswitch	C	65	G	66	A	67	A	68	A	69	G	70	cWW
269	HL_4Y1M_004	4Y1M	0.1574	0	GNRA	B	E. coli yybP-ykoY riboswitch	A	81	G	82	A	83	A	84	A	85	U	86	cWW		ntSH
270	HL_8B0X_020	8B0X	0.1607	0	GNRA (H)	A	SSU rRNA	A	1012	G	1013	A	1014	G	1015	A	1016	U	1017	cWW		ntSH
271	HL_4LFB_019	4LFB	0.1836	0	GNRA	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW		ntSH
272	HL_8B0X_017	8B0X	0.1762	0	GNRA (H)	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW		ntSH
273	HL_6GYV_004	6GYV	0.1945	0		A	Lariat-capping ribozyme	C	125	U	126	A	127	A	128	C	129	G	130	cWW		ntSH
274	HL_6YMC_001	6YMC	0.2144	0	GNRA	A	RNA (26-MER)	G	11	G	12	A	13	A	14	A	15	C	16	cWW		ntSH
275	HL_8CRE_222	8CRE	0.2125	0	GNRA	CM	SSU rRNA	C	1488	G	1489	A	1490	G	1491	A	1492	G	1493	cWW		ntSH
276	HL_8P9A_221	8P9A	0.2762	0	GNRA	sR	SSU rRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW		ntSH
277	HL_4V9F_070	4V9F	0.1826	0	GNRA	0	LSU rRNA	G	2876	G	2877	U	2878	A	2879	A	2880	C	2881	cWW		ntSH
278	HL_3E5C_001	3E5C	0.1641	0	GNRA	A	SMK box (SAM-III) Riboswitch	G	18	G	19	A	20	A	21	A	22	C	23	cWW		tSH
279	HL_6CB3_004	6CB3	0.1807	0	GNRA	B	RNA (99-MER)	G	20	G	21	A	22	A	23	A	24	C	25	cWW		ntSH
280	HL_5FQ5_003	5FQ5	0.2123	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	ncWW		ntSH
281	HL_7QR0_003	7QR0	0.1899	0	GNRA	A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW		ntSH
282	HL_9DFE_025	9DFE	0.2159	2	GNRA	1A	LSU rRNA	C	955	G	956	A	957	A	959	A	960	G	962	cWW		ntSH
283	HL_4WF9_027	4WF9	0.2476	2	GNRA	X	LSU rRNA	U	999	G	1000	A	1001	A	1003	A	1004	G	1006	cWW		ntSH
284	HL_7A0S_026	7A0S	0.2060	2	GNRA	X	LSU rRNA	A	966	G	967	C	968	A	970	A	971	U	973	cWW		ntSH
285	HL_5BTM_001	5BTM	0.1554	0	GNRA	A	RNA (55-mer)	U	26	G	27	A	28	A	29	A	30	G	31	cWW		ntSH
286	HL_6WPI_001	6WPI	0.1725	0	GNRA	B	RNA (47-MER)	U	25	G	26	A	27	A	28	A	29	G	30	cWW		ntSH
287	HL_4PCJ_001	4PCJ	0.1666	0	GNRA	A	trCUG-3('5)	U	16	G	17	A	18	A	19	A	20	G	21	cWW		ntSH
288	HL_8B0X_006	8B0X	0.1816	0	GNRA (H)	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		ntSH
289	HL_4LFB_007	4LFB	0.2077	0	GNRA	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW		ntSH
290	HL_3RG5_007	3RG5	0.1857	0	GNRA	B	Selenocysteine transfer RNA	U	47\|\|\|C	U	47\|\|\|D	A	47\|\|\|E	G	47\|\|\|F	C	47\|\|\|G	G	47\|\|\|H	cWW		ntSHa
291	HL_9AXU_023	9AXU	0.1815	1	GNRA (H)	2	LSU rRNA	G	1157	G	1158	U	1159	A	1160	A	1161	C	1163	cWW		ntSH
292	HL_9E6Q_027	9E6Q	0.1942	1	GNRA (H)	1	LSU rRNA	G	1077	G	1078	U	1079	A	1080	A	1081	C	1083	cWW		ntSH
293	HL_4V9F_028	4V9F	0.1637	1	GNRA	0	LSU rRNA	G	1054	G	1055	U	1056	A	1057	A	1058	C	1060	cWW		ntSH
294	HL_8GLP_028	8GLP	0.1608	1		L5	LSU rRNA	G	1864	G	1865	U	1866	A	1867	A	1868	C	1870	cWW		ntSH
295	HL_8P9A_137	8P9A	0.1782	1	GNRA	AR	LSU rRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW		ntSH
296	HL_8OI5_024	8OI5	0.1819	1	GNRA (H)	1	LSU rRNA	G	1122	G	1123	U	1124	A	1125	A	1126	C	1128	cWW
297	HL_4V9F_045	4V9F	0.1773	1	GNRA	0	LSU rRNA	C	1793	G	1794	G	1795	A	1796	A	1797	G	1799	cWW
298	HL_7KKV_003	7KKV	0.2375	1	GNRA	B	OLE* RNA	G	528	G	529	A	530	A	531	A	532	C	534	cWW
299	HL_8P9A_158	8P9A	0.2594	1	GNRA	AR	LSU rRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW		ntSH
300	HL_8OI5_042	8OI5	0.2454	1	GNRA (H)	1	LSU rRNA	A	2142	G	2143	A	2144	A	2145	A	2146	U	2148	cWW		ntSH
301	HL_9AXU_043	9AXU	0.2590	1	GNRA (H)	2	LSU rRNA	A	2252	G	2253	A	2254	A	2255	A	2256	U	2258	ncWW		tSH
302	HL_4KQY_002	4KQY	0.3321	0	GNRA	A	SAM-I riboswitch	C	60	G	61	A	62	A	63	A	64	G	65	ncWW		ntSH
303	HL_4LFB_022	4LFB	0.2784	0	GNRA	A	SSU rRNA	U	1012	G	1013	A	1014	A	1015	A	1016	G	1017	cWW		ntSH
304	HL_6JDV_001	6JDV	0.2842	0	GNRA	B	CRISPR RNA direct repeat element	G	48	G	49	A	50	A	51	A	52	C	53	cWW
305	HL_6ASO_001	6ASO	0.3762	1	GNRA	I	U6 snRNA	U	70	G	71	C	72	U	74	A	75	A	76	ncWW		tSH
306	HL_8B0X_100	8B0X	0.3655	2	GNRA (H)	a	LSU rRNA	PSU	957	G	958	C	959	A	961	A	962	G	964	cWW		ntSH
307	HL_4WF9_071	4WF9	0.4144	0	GNRA	X	LSU rRNA	U	1762	U	1763	A	1764	A	1765	C	1766	G	1767	ncWW	ntsS
308	HL_8B0X_069	8B0X	0.3750	1	GNRA (H)	a	LSU rRNA	A	1632	G	1633	A	1634	G	1635	A	1637	U	1638	cWW		tSH
309	HL_5LM7_001	5LM7	0.3029	1	GNRA	G	RNA (29-MER)	U	21	G	22	A	23	A	24	A	26	A	27	cWW		ntSH
310	HL_3D0U_003	3D0U	0.3132	1	GNRA	A	Lysine Riboswitch RNA	G	121	G	122	A	123	A	124	A	126	C	127	cWW		tSH
311	HL_2XLK_001	2XLK	0.2642	1	GNRA	C	RNA (16-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW		tSH
312	HL_4AL5_001	4AL5	0.2658	1	GNRA	B	RNA (20-mer)	C	10	G	11	U	12	A	13	A	15	G	16	cWW		tSH
313	HL_8B0X_047	8B0X	0.2363	1	GNRA (H)	a	LSU rRNA	C	487	G	488	G	489	G	491	A	492	G	493	cWW		tSH
314	HL_5O6U_001	5O6U	0.3174	1	GNRA	A	crRNA	C	32	G	33	C	34	A	35	A	37	G	38	cWW		ntSH
315	HL_9E6Q_022	9E6Q	0.2817	0	GNRA (H)	1	LSU rRNA	U	759	U	760	A	761	A	762	A	763	G	764	cWW		ntSH
316	HL_4WF9_021	4WF9	0.4607	1	GNRA	X	LSU rRNA	U	686	G	687	A	688	A	689	A	691	G	692	cWW		ntSH
317	HL_9DFE_019	9DFE	0.4250	1	GNRA	1A	LSU rRNA	C	641	G	642	A	643	A	644	A	646	G	647	cWW		tSH
318	HL_9AXU_039	9AXU	0.5233	1	GNRA (H)	2	LSU rRNA	U	1917	G	1918	A	1919	A	1920	A	1922	G	1923	cWW		tSH
319	HL_8GLP_046	8GLP	0.5265	1	GNRA (H)	L5	LSU rRNA	U	2810	G	2811	A	2812	A	2813	A2M	2815	G	2816	cWW		tSH
320	HL_8P9A_153	8P9A	0.5392	1	GNRA	AR	LSU rRNA	U	1862	G	1863	A	1864	A	1865	A	1867	G	1868	cWW		tSH
321	HL_9E6Q_041	9E6Q	0.4652	1		1	LSU rRNA	U	1773	G	1774	A	1775	G	1776	A	1778	G	1779	cWW		tSH
322	HL_8OI5_038	8OI5	0.4985	1	GNRA (H)	1	LSU rRNA	U	1858	U	1859	A	1860	A	1861	A	1863	G	1864	cWW		ntSH
323	HL_9E6Q_004	9E6Q	0.4058	1		1	LSU rRNA	C	130	G	131	A	132	A	133	A	135	G	136	cWW		tSH
324	HL_4V9F_016	4V9F	0.4305	1	GNRA	0	LSU rRNA	U	493	C	494	A	495	G	496	A	498	G	499	cWW		ntSH
325	HL_8B0X_049	8B0X	0.3671	1		a	LSU rRNA	C	613	G	614	A	615	A	616	A	618	G	619	cWW		tSH
326	HL_4V9F_036	4V9F	0.4288	1	GNRA	0	LSU rRNA	G	1468	C	1469	A	1470	A	1471	C	1472	C	1474	cWW		tSHa
327	HL_9E6Q_033	9E6Q	0.4690	1	GNRA (H)	1	LSU rRNA	C	1491	U	1492	A	1493	A	1494	U	1495	G	1497	cWW
328	HL_9DFE_041	9DFE	0.5116	1	GNRA	1A	LSU rRNA	U	1720	G	1721	A	1722	G	1740	A	1741	G	1742	ncWW
329	HL_4LFB_012	4LFB	0.4520	1	GNRA	A	SSU rRNA	C	458	G	459	A	460	G	462	A	463	G	474	cWW		tSH
330	HL_8B0X_024	8B0X	0.3560	1	GNRA (H)	A	SSU rRNA	U	1165	G	1166	A	1167	A	1169	A	1170	A	1171	cWW		tSH
331	HL_9E6Q_009	9E6Q	0.4861	1	GNRA (H)	1	LSU rRNA	G	267	G	268	A	269	A	271	A	272	C	273	cWW		tSH
332	HL_4V9F_022	4V9F	0.5167	0	GNRA	0	LSU rRNA	U	733	U	734	C	735	A	736	A	737	G	738	cWW
333	HL_8P9A_232	8P9A	0.4452	1	GNRA	AR	LSU rRNA	C	1023	G	1024	A	1025	A	1026	A	1027	G	1029	ncWW			ncSW
334	HL_5VSU_001	5VSU	0.4076	0	GNRA variation	I	U6 snRNA	U	70	G	71	C	72	A	73	U	74	A	75	cWW
335	HL_8GLP_081	8GLP	0.6854	1		L8	5.8S rRNA	G	122	U	124	C	125	C	126	U	127	C	128	cWW		ncWH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	62
GGAAAC	34
CGAGAG	18
UGAAAA	16
CGUGAG	16
CGCAAG	14
AGAAAU	14
UGAAAG	12
CGCGAG	8
CGUAAG	7
AGUGAU	6
GGUAAGC	6
GGAGAC	5
GGUGAC	5
GGCAAC	5
CGGAAG	4
GGUAAC	4
GAAGCU	3
GGCGAC	3
CGGGAG	3
CUAACG	3
AGAAAGU	3
GUAAUUC	2
GUGAAC	2
GGGAGC	2
CGAAGG	2
UGCAAG	2
AGCGAU	2
UGUGAA	2
UGAGAG	2
CGUAUAG	2
UGAACAG	2
CGAAUAG	2
CGCGGCG	1
GUAUUC	1
UGUGAG	1
GGC	1
CGGG	1
GUGC	1
CGACAG	1
CGAACG	1
CAGCC(7MG)	1
CAGCC(G7M)	1
UAAGGG	1
UCAGGG	1
(A2M)GAAA(PSU)	1
CGAGCG	1
CAAACG	1
UGACGG	1
CGGCAG	1
UGAAGG	1
UGAAG(A2M)	1
AGCAAU	1
CGCAGG	1
UGUAAA	1
CGCGGG	1
(OMC)GUGAG	1
CGUAA(OMG)	1
UGCAAA	1
AAAAAU	1
CUCACG	1
UGAGAA	1
CCAAAG	1
AGAGAU	1
CGAUAACG	1
UGAUAAGG	1
AGCUAACU	1
UUAGCG	1
CGGAACG	1
GGAAAUC	1
UGCAUAA	1
(PSU)GCUAACG	1
UUAACG	1
AGAGAAU	1
UGAAGAA	1
GGAAUAC	1
CGGCGAG	1
CGCACAG	1
UUAAAG	1
UGAAUAG	1
CGAACAG	1
UGAACG	1
UGAGAAG	1
UUAACAG	1
UCAGAAG	1
GCAACUC	1
CUAAUAG	1
UGAUGAG	1
CGACGAG	1
UGAUAAA	1
GGACAAC	1
UUCAAG	1
CGAAAUG	1
UGCAUA	1
GUUCCUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	139
GUGA	31
GAGA	27
GCAA	23
GUAA	13
GCGA	13
GUAAG	6
GGAA	4
GAAG	4
UAAC	4
GAAUA	4
AAGC	3
GGGA	3
GAAAG	3
GAACA	3
UAAUU	2
UGAA	2
GGAG	2
AGCC	2
GCUAAC	2
GAAAU	2
GAGAA	2
GUAUA	2
GCGGC	1
UA(A2M)UU	1
(2MG)G(MA6)(MA6)	1
GG(MA6)(MA6)	1
UG(MA6)(MA6)	1
GACA	1
GAAC	1
AAGG	1
CAGG	1
GAGC	1
AAAC	1
GACG	1
GGCA	1
GCAG	1
GCGG	1
AAAA	1
UCAC	1
CAAA	1
GAUAAC	1
GAUAAG	1
UAGC	1
GGAAC	1
GCAUA	1
GAAGA	1
GGCGA	1
GCACA	1
UAAA	1
GAAC(A2M)	1
UAACA	1
CAGAA	1
CAACU	1
UAAUA	1
GAUGA	1
GACGA	1
GAUAA	1
GACAA	1
UCAA	1
GCAU	1
UUCCU	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: GNRA (216)
GNRA (H) (83)
(16)
GNRA variation (10)
GNRA variation (H) (5)
GNRA related (2)
GNRA with GA tSW pair (1)
GNRA with GA tSW pair (H) (1)
GNRA related (H) (1)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.04 | Avg 0.30 | Max 0.97

Help

Coloring options: Nucleotide numbers

Motif HL_34789.1 Version HL_34789.1 of this group appears in releases 4.0 to 4.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_34789.1 Version HL_34789.1 of this group appears in releases 4.0 to 4.0

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Csv

Json