HL_5T7V_039

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5T7V|1|B|A|372, 5T7V|1|B|A|373, 5T7V|1|B|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_039 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2153

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5T7V|1|B|G|370
5T7V|1|B|U|371
5T7V|1|B|A|372
5T7V|1|B|A|373
5T7V|1|B|U|374
5T7V|1|B|A|375
5T7V|1|B|A|376
5T7V|1|B|U|377
5T7V|1|B|C|378

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L7

50S ribosomal protein L24

Chain LJ

50S ribosomal protein L4