HL_5T7V_053

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

5T7V|1|B|U|1002, 5T7V|1|B|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_053 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1393

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5T7V|1|B|U|999
5T7V|1|B|G|1000
5T7V|1|B|A|1001
5T7V|1|B|U|1002
5T7V|1|B|A|1003
5T7V|1|B|A|1004
5T7V|1|B|G|1005
5T7V|1|B|G|1006

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16