HL_5T7V_065

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

5T7V|1|B|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_065 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2056

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5T7V|1|B|A|1673
5T7V|1|B|U|1674
5T7V|1|B|G|1675
5T7V|1|B|A|1676
5T7V|1|B|G|1677
5T7V|1|B|A|1678
5T7V|1|B|A|1679
5T7V|1|B|U|1680
5T7V|1|B|U|1681

Current chains

Chain B

23S ribosomal RNA

Nearby chains