HL_5T7V_072

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5T7V|1|B|A|1940

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_072 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.4553

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

5T7V|1|B|G|1937
5T7V|1|B|U|1938
5T7V|1|B|A|1939
5T7V|1|B|A|1940
5T7V|1|B|C|1941
5T7V|1|B|U|1942
5T7V|1|B|A|1943
5T7V|1|B|U|1944
5T7V|1|B|A|1945
5T7V|1|B|A|1946
5T7V|1|B|C|1947

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA