HL_5T7V_093

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGCCG

Length

7 nucleotides

Bulged bases

5T7V|1|C|G|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_093 not in the Motif Atlas

Geometric match to HL_4V9F_071

Geometric discrepancy: 0.22

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5T7V|1|C|C|36
5T7V|1|C|A|37
5T7V|1|C|U|38
5T7V|1|C|G|39
5T7V|1|C|C|40
5T7V|1|C|C|41
5T7V|1|C|G|42

Current chains

Chain C

5S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain LR

50S ribosomal protein L18