HL_5T7V_118

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGUGACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_118 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2899

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5T7V|1|B|U|2875
5T7V|1|B|G|2876
5T7V|1|B|G|2877
5T7V|1|B|U|2878
5T7V|1|B|G|2879
5T7V|1|B|A|2880
5T7V|1|B|C|2881
5T7V|1|B|A|2882

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L19