HL_5T7V_128

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

5T7V|1|B|G|432, 5T7V|1|B|A|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_128 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.1867

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5T7V|1|B|A|427
5T7V|1|B|G|428
5T7V|1|B|C|429
5T7V|1|B|A|430
5T7V|1|B|C|431
5T7V|1|B|G|432
5T7V|1|B|U|433
5T7V|1|B|G|434
5T7V|1|B|A|435
5T7V|1|B|A|436
5T7V|1|B|A|437
5T7V|1|B|U|438
5T7V|1|B|U|439

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain LA

50S ribosomal protein L28