HL_5T7V_130

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5T7V_130 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1488

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.7

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

5T7V|1|B|G|1318
5T7V|1|B|U|1319
5T7V|1|B|G|1320
5T7V|1|B|A|1321
5T7V|1|B|G|1322
5T7V|1|B|A|1323
5T7V|1|B|A|1324
5T7V|1|B|U|1325
5T7V|1|B|C|1326

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain LE

50S ribosomal protein L32

Chain LQ

50S ribosomal protein L17