3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUUGGGAAUG
Length
10 nucleotides
Bulged bases
5TBW|1|1|G|283, 5TBW|1|1|A|284, 5TBW|1|1|A|285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

5TBW|1|1|U|278
5TBW|1|1|U|279
5TBW|1|1|U|280
5TBW|1|1|G|281
5TBW|1|1|G|282
5TBW|1|1|G|283
5TBW|1|1|A|284
5TBW|1|1|A|285
5TBW|1|1|U|286
5TBW|1|1|G|287

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L28
Chain AP
60S ribosomal protein L42-A
Chain t
60S ribosomal protein L13-A
Chain v
60S ribosomal protein L15-A

Coloring options:

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