3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGUAAAAC
Length
9 nucleotides
Bulged bases (A, C, G, U)
689U, 691A
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03345.1
Basepair signature
cWW-cSW-tSH-F
Number of instances in this motif group
3

Unit IDs

5TBW|1|1|G|686
5TBW|1|1|U|687
5TBW|1|1|G|688
5TBW|1|1|U|689
5TBW|1|1|A|690
5TBW|1|1|A|691
5TBW|1|1|A|692
5TBW|1|1|A|693
5TBW|1|1|C|694

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain 9
60S ribosomal protein L26-A
Chain l
60S ribosomal protein L4-A
Chain t
60S ribosomal protein L13-A
Chain v
60S ribosomal protein L15-A

Coloring options:

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