HL_5TBW_015

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGUAAAAC

Length

9 nucleotides

Bulged bases (A, C, G, U)

689U, 691A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03345.1

Basepair signature

cWW-cSW-tSH-F

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|G|686
5TBW|1|1|U|687
5TBW|1|1|G|688
5TBW|1|1|U|689
5TBW|1|1|A|690
5TBW|1|1|A|691
5TBW|1|1|A|692
5TBW|1|1|A|693
5TBW|1|1|C|694

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L4-A

Chain t

60S ribosomal protein L13-A

Chain v

60S ribosomal protein L15-A