Motif HL_53971.1 Version HL_53971.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DB9_002 | 6DB9 | 0.9689 | 3 | R | RNA (60-MER) | G | 36 | G | 37 | U | 38 | G | 39 | U | 42 | A | 44 | C | 45 | cWW | ntsS | |
| 2 | HL_3IGI_010 | 3IGI | 0.6148 | 3 | A | Group IIC intron | C | 305 | U | 306 | G | 307 | U | 308 | C | 312 | A | 313 | G | 314 | ncWW | ncWS | |
| 3 | HL_5TBW_015 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | G | 686 | U | 687 | G | 688 | A | 690 | A | 692 | A | 693 | C | 694 | cWW | tSH | |
| 4 | HL_8C3A_015 | 8C3A | 0.0673 | 2 | 1 | LSU rRNA | G | 684 | U | 685 | G | 686 | A | 688 | A | 690 | A | 691 | C | 692 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGUAAAAC | 2 |
| GGUGAAUGAC | 1 |
| CUGUUCGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUAAAA | 2 |
| GUGAAUGA | 1 |
| UGUUCGCA | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.50 | Max 0.97
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