3D structure

PDB id
5TBW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACGUGCAAAU
Length
10 nucleotides
Bulged bases
5TBW|1|1|U|879, 5TBW|1|1|A|883, 5TBW|1|1|A|884
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.8
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

5TBW|1|1|A|876
5TBW|1|1|C|877
5TBW|1|1|G|878
5TBW|1|1|U|879
5TBW|1|1|G|880
5TBW|1|1|C|881
5TBW|1|1|A|882
5TBW|1|1|A|883
5TBW|1|1|A|884
5TBW|1|1|U|885

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AK
60S ribosomal protein L37-A
Chain k
60S ribosomal protein L3
Chain x
60S ribosomal protein L17-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1447 s