HL_5TBW_046

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

5TBW|1|1|A|2138, 5TBW|1|1|A|2139, 5TBW|1|1|U|2140, 5TBW|1|1|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|U|2135
5TBW|1|1|C|2136
5TBW|1|1|U|2137
5TBW|1|1|A|2138
5TBW|1|1|A|2139
5TBW|1|1|U|2140
5TBW|1|1|U|2141
5TBW|1|1|A|2142
5TBW|1|1|A|2143
5TBW|1|1|A|2144
5TBW|1|1|A|2145

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AK

60S ribosomal protein L37-A

Chain j

60S ribosomal protein L2-A