Motif HL_43613.6 Version HL_43613.6 of this group appears in releases 3.87 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_046 | 8C3A | 0.1719 | 4 | 1 | U | 2113 | C | 2114 | U | 2115 | U | 2119 | A | 2120 | A | 2121 | A | 2123 | cWW | tWH | tWH |
| 2 | HL_5TBW_046 | 5TBW | 0.1515 | 4 | 1 | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 3 | HL_4WF9_043 | 4WF9 | 0.0844 | 4 | X | U | 1804 | U | 1805 | U | 1806 | A | 1810 | A | 1811 | A | 1812 | A | 1814 | cWW | tWH | |
| 4 | HL_5J7L_178 | 5J7L | 0.0000 | 4 | DA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 5 | HL_8VTW_044 | 8VTW | 0.0553 | 4 | 1A | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 6 | HL_4V9F_047 | 4V9F | 0.0822 | 4 | 0 | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAAAA | 2 |
| UUUAUCAAAAA | 1 |
| UUUAUUAAAAA | 1 |
| UUUACCAAAAA | 1 |
| UCUAGUAACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUAAA | 2 |
| UUAUCAAAA | 1 |
| UUAUUAAAA | 1 |
| UUACCAAAA | 1 |
| CUAGUAACA | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-tWH-tWH-F
- Heat map statistics
- Min 0.06 | Avg 0.11 | Max 0.19
Coloring options: