HL_5TBW_109
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5TBW|1|A|U|1557, 5TBW|1|A|U|1558, 5TBW|1|A|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TBW_109 not in the Motif Atlas
- Geometric match to HL_4V88_219
- Geometric discrepancy: 0.079
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5TBW|1|A|A|1550
5TBW|1|A|U|1551
5TBW|1|A|U|1552
5TBW|1|A|G|1553
5TBW|1|A|U|1554
5TBW|1|A|A|1555
5TBW|1|A|A|1556
5TBW|1|A|U|1557
5TBW|1|A|U|1558
5TBW|1|A|A|1559
5TBW|1|A|U|1560
5TBW|1|A|U|1561
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S15
- Chain T
- 40S ribosomal protein S18-A
- Chain U
- 40S ribosomal protein S19-A
- Chain e
- 40S ribosomal protein S29-A
- Chain i
- Suppressor protein STM1
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