HL_5TBW_133

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5TBW|1|AR|A|913, 5TBW|1|AR|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_133 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0503

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5TBW|1|AR|G|910
5TBW|1|AR|C|911
5TBW|1|AR|G|912
5TBW|1|AR|A|913
5TBW|1|AR|A|914
5TBW|1|AR|A|915
5TBW|1|AR|G|916
5TBW|1|AR|A|917
5TBW|1|AR|C|918

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CP

60S ribosomal protein L15-A

Chain DL

60S ribosomal protein L37-A