HL_5TBW_149

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

5TBW|1|AR|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_149 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.0729

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5TBW|1|AR|G|1680
5TBW|1|AR|U|1681
5TBW|1|AR|U|1682
5TBW|1|AR|A|1683
5TBW|1|AR|U|1684
5TBW|1|AR|C|1685
5TBW|1|AR|U|1686
5TBW|1|AR|U|1687
5TBW|1|AR|U|1688

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain CW

60S ribosomal protein L22-A