HL_5TBW_168

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

5TBW|1|AR|A|2637, 5TBW|1|AR|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_168 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0459

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

5TBW|1|AR|U|2633
5TBW|1|AR|U|2634
5TBW|1|AR|A|2635
5TBW|1|AR|A|2636
5TBW|1|AR|A|2637
5TBW|1|AR|C|2638
5TBW|1|AR|G|2639
5TBW|1|AR|A|2640
5TBW|1|AR|U|2641
5TBW|1|AR|A|2642
5TBW|1|AR|A|2643
5TBW|1|AR|C|2644
5TBW|1|AR|G|2645

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29