HL_5TBW_174

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_174 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.0581

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5TBW|1|AR|C|2840
5TBW|1|AR|G|2841
5TBW|1|AR|U|2842
5TBW|1|AR|U|2843
5TBW|1|AR|C|2844
5TBW|1|AR|A|2845
5TBW|1|AR|U|2846
5TBW|1|AR|A|2847
5TBW|1|AR|G|2848

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain DO

Ubiquitin-60S ribosomal protein L40