HL_5TBW_209

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_209 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.0714

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5TBW|1|sR|A|900
5TBW|1|sR|G|901
5TBW|1|sR|G|902
5TBW|1|sR|U|903
5TBW|1|sR|G|904
5TBW|1|sR|A|905
5TBW|1|sR|A|906
5TBW|1|sR|A|907
5TBW|1|sR|U|908
5TBW|1|sR|U|909

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c4

40S ribosomal protein S14-B

Chain d6

40S ribosomal protein S26-B

Chain s5

40S ribosomal protein S5