HL_5TBW_211

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

5TBW|1|sR|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_211 not in the Motif Atlas

Geometric match to HL_4V88_208

Geometric discrepancy: 0.0528

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5TBW|1|sR|G|997
5TBW|1|sR|A|998
5TBW|1|sR|U|999
5TBW|1|sR|C|1000
5TBW|1|sR|A|1001
5TBW|1|sR|G|1002
5TBW|1|sR|A|1003
5TBW|1|sR|U|1004
5TBW|1|sR|A|1005
5TBW|1|sR|C|1006
5TBW|1|sR|C|1007

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain c4

40S ribosomal protein S14-B

Chain d6

40S ribosomal protein S26-B