HL_5TBW_230

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGCGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_61933.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5TBW|1|4|C|47
5TBW|1|4|A|48
5TBW|1|4|G|49
5TBW|1|4|C|50
5TBW|1|4|G|51
5TBW|1|4|A|52
5TBW|1|4|A|53
5TBW|1|4|A|54
5TBW|1|4|U|55
5TBW|1|4|G|56

Current chains

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 8

60S ribosomal protein L25

Chain AI

60S ribosomal protein L35-A

Chain AK

60S ribosomal protein L37-A

Chain AM

60S ribosomal protein L39