Motif HL_61933.2 Version HL_61933.2 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8P4V_072 | 8P4V | 0.2558 | 0 | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | |||
| 2 | HL_5TBW_230 | 5TBW | 0.2578 | 0 | Pseudoknot with intercalation | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | ||
| 3 | HL_8C3A_229 | 8C3A | 0.2425 | 0 | Pseudoknot with intercalation | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | ||
| 4 | HL_8VTW_001 | 8VTW | 0.2036 | 0 | Pseudoknot with intercalation | 1A | LSU rRNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | ncSH | |
| 5 | HL_4V9F_001 | 4V9F | 0.1696 | 0 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH | |
| 6 | HL_7A0S_001 | 7A0S | 0.0000 | 0 | Pseudoknot with intercalation | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | |
| 7 | HL_4WF9_067 | 4WF9 | 0.1903 | 0 | Pseudoknot with intercalation | X | LSU rRNA | U | 59 | U | 60 | A | 61 | C | 62 | U | 63 | A | 64 | A | 65 | C | 66 | G | 67 | A | 68 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCGAAAUG | 3 |
| UGGCUACCUG | 1 |
| UGCCAAGCUG | 1 |
| CGAUUACCUG | 1 |
| UUACUAACGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGAAAU | 3 |
| GGCUACCU | 1 |
| GCCAAGCU | 1 |
| GAUUACCU | 1 |
| UACUAACG | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot with intercalation (6)
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.21 | Max 0.43
Coloring options: