HL_5TCU_004

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TCU_004 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.1732

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5TCU|1|A|C|303
5TCU|1|A|U|304
5TCU|1|A|G|305
5TCU|1|A|A|306
5TCU|1|A|G|307
5TCU|1|A|A|308
5TCU|1|A|G|309
5TCU|1|A|G|310

Current chains

Chain A

16S RRNA

Nearby chains

Chain S3

30S ribosomal protein S12

Chain S8

30S ribosomal protein S17

Chain SD

30S ribosomal protein S5